terrycojones:Institut für Virologie, Charité Universitätsmedizin (Berlin) & Dept. of Zoology, University of Cambridge

terrycojones push acorg/dark-matter

Updated Makefile twine upload target

commit sha：f4b86097614f32057d9b4350a1a5e4a615c7ec0e

Created at 2 weeks ago

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terrycojones push VirologyCharite/gb2seq

Updated Makefile twine upload target

commit sha：628da737972331ab22f2fd9c1668ca0518fe3873

Created at 2 weeks ago

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terrycojones push VirologyCharite/gb2seq

Updated Makefile twine upload command

commit sha：9109c06504543e9b265d7eae70a2354d15c01444

Updated Makefile twine upload command

commit sha：7192f869c770a30f3a94fdeb388fd4c0ecd038a5

Created at 2 weeks ago

delete branch

terrycojones delete branch show-features-in-genome

Created at 2 weeks ago

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terrycojones push VirologyCharite/gb2seq

Added first cut at printing genome features (in addition to the reference features) to describe-feature.py

commit sha：3c1ba31f96dc55470dc68fc1a3243667d14ffe1e

Added describe-feature.py --genome option.

commit sha：a68eae43dc2f65e324e6a16c415599a4ae9b96f8

Updated README

commit sha：bdef475fafd505dabfff7f21656df4bbc4c89fc7

Added allowAmbiguous option to feature offset info and way to pass more help text for the --reference option.

commit sha：34726a37190656785837cc57935fb5fbf2dca6af

Merge pull request #2 from VirologyCharite/show-features-in-genome

Added --genome option to describe-feature.py to also show features in a genome (not just the reference)

commit sha：57fa11ace6c61aac603e5eb7840fe57909a8057b

Created at 2 weeks ago

pull request closed

Added --genome option to describe-feature.py to also show features in a genome (not just the reference)

Created at 2 weeks ago

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terrycojones push acorg/dark-matter

Modified Makefile upload target to use an API key not a user/password.

commit sha：f204bdaeef8c728ac13e1c849bbf1a7054410eeb

Created at 2 weeks ago

delete branch

terrycojones delete branch add-feature-details

Created at 2 weeks ago

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terrycojones push acorg/dark-matter

Added --reference option to sam-coverage-depth.py.

commit sha：c462d19624685f78d0cf36d0e297f9d35780505a

Merge pull request #770 from terrycojones/add-feature-details

Added --reference option to sam-coverage-depth.py.

commit sha：ecf72245afcd3bc43af39e7def0c7d3adc52bc23

Created at 2 weeks ago

pull request closed

Added --reference option to sam-coverage-depth.py.

Created at 2 weeks ago

push

terrycojones push VirologyCharite/gb2seq

Added allowAmbiguous option to feature offset info and way to pass more help text for the --reference option.

commit sha：34726a37190656785837cc57935fb5fbf2dca6af

Created at 2 weeks ago

pull request opened

Added --reference option to sam-coverage-depth.py.

Created at 2 weeks ago

create branch

terrycojones create branch add-feature-details

Created at 2 weeks ago

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terrycojones push VirologyCharite/gb2seq

Updated README

commit sha：bdef475fafd505dabfff7f21656df4bbc4c89fc7

Created at 2 weeks ago

pull request opened

Added --genome option to describe-feature.py to also show features in a genome (not just the reference)

Created at 2 weeks ago

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VirologyCharite/baxolele-stop-codons

terrycojones push VirologyCharite/gb2seq

Added describe-feature.py --genome option.

commit sha：a68eae43dc2f65e324e6a16c415599a4ae9b96f8

Created at 2 weeks ago

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terrycojones push VirologyCharite/baxolele-stop-codons

Added new codon-count-with-soft-and-quality.py script and original and new results.

commit sha：b5ea43acfa74d6e9e86a4a0e70e3dda469915ead

Created at 2 weeks ago

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VirologyCharite/baxolele-stop-codons

terrycojones push VirologyCharite/baxolele-stop-codons

Added another sanity check.

commit sha：6e418ed7627e53f24a078050b1c3f359c71e8725

Created at 3 weeks ago

create branch

terrycojones create branch show-features-in-genome

Created at 3 weeks ago

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terrycojones push acorg/dark-matter

Make mafft and needle aligners return an empty list when dryRun is True

commit sha：89d667670cd57d790e776aa170b6ba314459a930

Created at 2 months ago

delete branch

terrycojones delete branch add-format-option-to-tree-printing

Created at 2 months ago

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terrycojones push acorg/dark-matter

Added --format to newick printing.

commit sha：de5c4a4d75f4704873457655c80716676ed0dc9a

Added executor and dryRun arguments to amfft and needle aligners

commit sha：159f633085a79f005d0319d888be2128c14af668

Merge pull request #769 from terrycojones/add-format-option-to-tree-printing

Add format option to tree printing and executor/dryRun args to mafft and needle aligners

commit sha：7103fb5eee048e1c5619577149576ae008b92beb

Created at 2 months ago

pull request closed

Add format option to tree printing and executor/dryRun args to mafft and needle aligners

Created at 2 months ago

pull request opened

Add format option to tree printing and executor/dryRun args to mafft and needle aligners

Created at 2 months ago

push

terrycojones push terrycojones/dark-matter

Added executor and dryRun arguments to amfft and needle aligners

commit sha：159f633085a79f005d0319d888be2128c14af668

Created at 2 months ago

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