terrycojones
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terrycojones create branch main
Created at 1 week ago
terrycojones create repository
Created at 1 week ago

Updated Makefile twine upload target

Created at 2 weeks ago

Updated Makefile twine upload target

Created at 2 weeks ago

Updated Makefile twine upload command

Updated Makefile twine upload command

Created at 2 weeks ago
delete branch
terrycojones delete branch show-features-in-genome
Created at 2 weeks ago

Added first cut at printing genome features (in addition to the reference features) to describe-feature.py

Added describe-feature.py --genome option.

Updated README

Added allowAmbiguous option to feature offset info and way to pass more help text for the --reference option.

Merge pull request #2 from VirologyCharite/show-features-in-genome

Added --genome option to describe-feature.py to also show features in a genome (not just the reference)

Created at 2 weeks ago
pull request closed
Added --genome option to describe-feature.py to also show features in a genome (not just the reference)
Created at 2 weeks ago

Modified Makefile upload target to use an API key not a user/password.

Created at 2 weeks ago
delete branch
terrycojones delete branch add-feature-details
Created at 2 weeks ago

Added --reference option to sam-coverage-depth.py.

Merge pull request #770 from terrycojones/add-feature-details

Added --reference option to sam-coverage-depth.py.

Created at 2 weeks ago
pull request closed
Added --reference option to sam-coverage-depth.py.
Created at 2 weeks ago

Added allowAmbiguous option to feature offset info and way to pass more help text for the --reference option.

Created at 2 weeks ago
pull request opened
Added --reference option to sam-coverage-depth.py.
Created at 2 weeks ago
create branch
terrycojones create branch add-feature-details
Created at 2 weeks ago

Updated README

Created at 2 weeks ago
pull request opened
Added --genome option to describe-feature.py to also show features in a genome (not just the reference)
Created at 2 weeks ago

Added describe-feature.py --genome option.

Created at 2 weeks ago

Added new codon-count-with-soft-and-quality.py script and original and new results.

Created at 2 weeks ago
create branch
terrycojones create branch show-features-in-genome
Created at 3 weeks ago

Make mafft and needle aligners return an empty list when dryRun is True

Created at 2 months ago
delete branch
terrycojones delete branch add-format-option-to-tree-printing
Created at 2 months ago

Added --format to newick printing.

Added executor and dryRun arguments to amfft and needle aligners

Merge pull request #769 from terrycojones/add-format-option-to-tree-printing

Add format option to tree printing and executor/dryRun args to mafft and needle aligners

Created at 2 months ago
pull request closed
Add format option to tree printing and executor/dryRun args to mafft and needle aligners
Created at 2 months ago
pull request opened
Add format option to tree printing and executor/dryRun args to mafft and needle aligners
Created at 2 months ago

Added executor and dryRun arguments to amfft and needle aligners

Created at 2 months ago

Added nsp16 as a sars-2 abbreviation for 2'-O-ribose methyltransferase. Made TranslationError a subclass of Gb2SeqError.

Created at 2 months ago